J3_7ZAG_014

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|908
7ZAG|1|2|A|909
7ZAG|1|2|A|910
7ZAG|1|2|G|911
*
7ZAG|1|2|C|1318
7ZAG|1|2|U|1319
7ZAG|1|2|A|1320
7ZAG|1|2|G|1321
7ZAG|1|2|U|1322
7ZAG|1|2|A|1323
7ZAG|1|2|C|1324
7ZAG|1|2|C|1325
*
7ZAG|1|2|G|1345
7ZAG|1|2|C|1346
7ZAG|1|2|G|1347
7ZAG|1|2|A|1348
7ZAG|1|2|A|1349
7ZAG|1|2|U|1350
7ZAG|1|2|A|1351
7ZAG|1|2|C|1352
7ZAG|1|2|G|1353

Current chains

Chain 2

rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain X

30S ribosomal protein S28e