J3_7ZAG_018

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UA(OMC)*GCGUC*GUAA

Length

12 nucleotides

Bulged bases

7ZAG|1|2|A|1066

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|U|1038
7ZAG|1|2|A|1039
7ZAG|1|2|OMC|1040
*
7ZAG|1|2|G|1047
7ZAG|1|2|C|1048
7ZAG|1|2|G|1049
7ZAG|1|2|U|1050
7ZAG|1|2|C|1051
*
7ZAG|1|2|G|1064
7ZAG|1|2|U|1065
7ZAG|1|2|A|1066
7ZAG|1|2|A|1067

Current chains

Chain 2

rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain F

30S ribosomal protein S5