J3_7ZJW_005

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GCUAAGGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

7ZJW|1|L5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|G|1908
7ZJW|1|L5|A|1909
7ZJW|1|L5|C|1910
*
7ZJW|1|L5|G|1934
7ZJW|1|L5|C|1935
7ZJW|1|L5|U|1936
7ZJW|1|L5|A|1937
7ZJW|1|L5|A|1938
7ZJW|1|L5|G|1939
7ZJW|1|L5|G|1940
7ZJW|1|L5|A|1941
7ZJW|1|L5|G|1942
7ZJW|1|L5|U|1943
7ZJW|1|L5|G|1944
*
7ZJW|1|L5|C|1953
7ZJW|1|L5|U|1954
7ZJW|1|L5|C|1955
7ZJW|1|L5|A|1956
7ZJW|1|L5|C|1957

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lt

60S ribosomal protein P0