J3_7ZJW_017

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CGC(A2M)AAUUA*U(A2M)GU

Length

15 nucleotides

Bulged bases

7ZJW|1|S2|C|484, 7ZJW|1|S2|U|489

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|S2|A|40
7ZJW|1|S2|G|41
*
7ZJW|1|S2|C|482
7ZJW|1|S2|G|483
7ZJW|1|S2|C|484
7ZJW|1|S2|A2M|485
7ZJW|1|S2|A|486
7ZJW|1|S2|A|487
7ZJW|1|S2|U|488
7ZJW|1|S2|U|489
7ZJW|1|S2|A|490
*
7ZJW|1|S2|U|512
7ZJW|1|S2|A2M|513
7ZJW|1|S2|G|514
7ZJW|1|S2|U|515

Current chains

Chain S2

18S rRNA

Nearby chains

Chain E

eEFSec

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain Si

40S ribosomal protein S23

Chain Sj

40S ribosomal protein S24