J3_7ZJW_019
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_019 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.2628
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|S2|A|817
7ZJW|1|S2|G|818
7ZJW|1|S2|A|819
7ZJW|1|S2|G|820
*
7ZJW|1|S2|C|830
7ZJW|1|S2|A|831
7ZJW|1|S2|G|832
*
7ZJW|1|S2|C|844
7ZJW|1|S2|U|845
7ZJW|1|S2|G|846
7ZJW|1|S2|G|847
7ZJW|1|S2|A|848
7ZJW|1|S2|U|849
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein eS4
- Chain SU
- 40S ribosomal protein S9
- Chain Sj
- 40S ribosomal protein S24
Coloring options: