3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAUUC*GGACCAGAG*CAUU(PSU)G
Length
20 nucleotides
Bulged bases
7ZJW|1|S2|G|992
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZJW|1|S2|C|938
7ZJW|1|S2|A|939
7ZJW|1|S2|U|940
7ZJW|1|S2|U|941
7ZJW|1|S2|C|942
*
7ZJW|1|S2|G|986
7ZJW|1|S2|G|987
7ZJW|1|S2|A|988
7ZJW|1|S2|C|989
7ZJW|1|S2|C|990
7ZJW|1|S2|A|991
7ZJW|1|S2|G|992
7ZJW|1|S2|A|993
7ZJW|1|S2|G|994
*
7ZJW|1|S2|C|1001
7ZJW|1|S2|A|1002
7ZJW|1|S2|U|1003
7ZJW|1|S2|U|1004
7ZJW|1|S2|PSU|1005
7ZJW|1|S2|G|1006

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Lr
60S ribosomal protein eL43
Chain SF
Ribosomal protein eS26
Chain SM
40S ribosomal protein S3a
Chain SY
40S ribosomal protein uS15
Chain SZ
40S ribosomal protein uS11

Coloring options:

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