J3_7ZJW_024
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)G*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7ZJW|1|S2|G|1257, 7ZJW|1|S2|A|1259, 7ZJW|1|S2|A|1261
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|S2|C|1238
7ZJW|1|S2|PSU|1239
7ZJW|1|S2|U|1240
7ZJW|1|S2|A|1241
7ZJW|1|S2|A|1242
7ZJW|1|S2|U|1243
7ZJW|1|S2|U|1244
7ZJW|1|S2|PSU|1245
7ZJW|1|S2|G|1246
*
7ZJW|1|S2|C|1255
7ZJW|1|S2|G|1256
7ZJW|1|S2|G|1257
7ZJW|1|S2|G|1258
7ZJW|1|S2|A|1259
7ZJW|1|S2|A|1260
7ZJW|1|S2|A|1261
7ZJW|1|S2|C|1262
7ZJW|1|S2|C|1263
7ZJW|1|S2|U|1264
7ZJW|1|S2|C|1265
7ZJW|1|S2|A|1266
7ZJW|1|S2|C|1267
*
7ZJW|1|S2|G|1517
7ZJW|1|S2|G|1518
7ZJW|1|S2|C|1519
7ZJW|1|S2|U|1520
7ZJW|1|S2|G|1521
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain F
- Selenocysteine transfer RNA
- Chain SD
- 40S ribosomal protein S27a
- Chain SH
- 40S ribosomal protein uS14
- Chain Sa
- 40S ribosomal protein uS19
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sd
- 40S ribosomal protein S18
- Chain Sf
- 40S ribosomal protein uS10
Coloring options: