J3_7ZJW_030

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7ZJW|1|L5|G|219, 7ZJW|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|C|196
7ZJW|1|L5|A|197
7ZJW|1|L5|A|198
7ZJW|1|L5|G|199
*
7ZJW|1|L5|C|215
7ZJW|1|L5|C|216
7ZJW|1|L5|C|217
7ZJW|1|L5|A|218
7ZJW|1|L5|G|219
7ZJW|1|L5|C|220
7ZJW|1|L5|C|221
7ZJW|1|L5|C|222
7ZJW|1|L5|G|223
7ZJW|1|L5|U|224
7ZJW|1|L5|G|225
7ZJW|1|L5|G|226
7ZJW|1|L5|A|227
7ZJW|1|L5|C|228
*
7ZJW|1|L5|G|240
7ZJW|1|L5|G|241
7ZJW|1|L5|U|242
7ZJW|1|L5|A|243
7ZJW|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L26