J3_7ZJW_033

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|C|451
7ZJW|1|L5|A|452
7ZJW|1|L5|G|453
7ZJW|1|L5|U|454
7ZJW|1|L5|C|455
*
7ZJW|1|L5|G|695
7ZJW|1|L5|U|696
7ZJW|1|L5|G|697
7ZJW|1|L5|C|698
7ZJW|1|L5|G|699
*
7ZJW|1|L5|C|1236
7ZJW|1|L5|G|1237
7ZJW|1|L5|A|1238
7ZJW|1|L5|U|1239
7ZJW|1|L5|G|1240

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain Lh

60S ribosomal protein eL32

Chain Li

60S ribosomal protein eL33

Chain Ls

60S ribosomal protein eL28