3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGGGCGAGCC*GGCUCUCGCUUCUGGCGCCAAG*CGAC
Length
36 nucleotides
Bulged bases
7ZJW|1|L5|C|3824, 7ZJW|1|L5|C|3844, 7ZJW|1|L5|U|3845, 7ZJW|1|L5|U|3846, 7ZJW|1|L5|G|3849
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZJW|1|L5|G|3820
7ZJW|1|L5|G|3821
7ZJW|1|L5|G|3822
7ZJW|1|L5|G|3823
7ZJW|1|L5|C|3824
7ZJW|1|L5|G|3825
7ZJW|1|L5|A|3826
7ZJW|1|L5|G|3827
7ZJW|1|L5|C|3828
7ZJW|1|L5|C|3829
*
7ZJW|1|L5|G|3836
7ZJW|1|L5|G|3837
7ZJW|1|L5|C|3838
7ZJW|1|L5|U|3839
7ZJW|1|L5|C|3840
7ZJW|1|L5|U|3841
7ZJW|1|L5|C|3842
7ZJW|1|L5|G|3843
7ZJW|1|L5|C|3844
7ZJW|1|L5|U|3845
7ZJW|1|L5|U|3846
7ZJW|1|L5|C|3847
7ZJW|1|L5|U|3848
7ZJW|1|L5|G|3849
7ZJW|1|L5|G|3850
7ZJW|1|L5|C|3851
7ZJW|1|L5|G|3852
7ZJW|1|L5|C|3853
7ZJW|1|L5|C|3854
7ZJW|1|L5|A|3855
7ZJW|1|L5|A|3856
7ZJW|1|L5|G|3857
*
7ZJW|1|L5|C|3901
7ZJW|1|L5|G|3902
7ZJW|1|L5|A|3903
7ZJW|1|L5|C|3904

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain LJ
60S ribosomal protein eL8
Chain Lc
60S ribosomal protein L27
Chain Lf
60S ribosomal protein eL30
Chain Lj
60S ribosomal protein L34
Chain Lr
60S ribosomal protein eL43
Chain SM
40S ribosomal protein S3a

Coloring options:

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