J3_7ZJW_037
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGGCGAGCC*GGCUCUCGCUUCUGGCGCCAAG*CGAC
- Length
- 36 nucleotides
- Bulged bases
- 7ZJW|1|L5|C|3824, 7ZJW|1|L5|C|3844, 7ZJW|1|L5|U|3845, 7ZJW|1|L5|U|3846, 7ZJW|1|L5|G|3849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|L5|G|3820
7ZJW|1|L5|G|3821
7ZJW|1|L5|G|3822
7ZJW|1|L5|G|3823
7ZJW|1|L5|C|3824
7ZJW|1|L5|G|3825
7ZJW|1|L5|A|3826
7ZJW|1|L5|G|3827
7ZJW|1|L5|C|3828
7ZJW|1|L5|C|3829
*
7ZJW|1|L5|G|3836
7ZJW|1|L5|G|3837
7ZJW|1|L5|C|3838
7ZJW|1|L5|U|3839
7ZJW|1|L5|C|3840
7ZJW|1|L5|U|3841
7ZJW|1|L5|C|3842
7ZJW|1|L5|G|3843
7ZJW|1|L5|C|3844
7ZJW|1|L5|U|3845
7ZJW|1|L5|U|3846
7ZJW|1|L5|C|3847
7ZJW|1|L5|U|3848
7ZJW|1|L5|G|3849
7ZJW|1|L5|G|3850
7ZJW|1|L5|C|3851
7ZJW|1|L5|G|3852
7ZJW|1|L5|C|3853
7ZJW|1|L5|C|3854
7ZJW|1|L5|A|3855
7ZJW|1|L5|A|3856
7ZJW|1|L5|G|3857
*
7ZJW|1|L5|C|3901
7ZJW|1|L5|G|3902
7ZJW|1|L5|A|3903
7ZJW|1|L5|C|3904
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain LJ
- 60S ribosomal protein eL8
- Chain Lc
- 60S ribosomal protein L27
- Chain Lf
- 60S ribosomal protein eL30
- Chain Lj
- 60S ribosomal protein L34
- Chain Lr
- 60S ribosomal protein eL43
- Chain SM
- 40S ribosomal protein S3a
Coloring options: