J3_7ZJX_007

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7ZJX|1|L5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJX_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1051

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|C|2236
7ZJX|1|L5|G|2237
7ZJX|1|L5|A|2238
7ZJX|1|L5|A|2239
7ZJX|1|L5|G|2240
7ZJX|1|L5|U|2241
7ZJX|1|L5|G|2242
*
7ZJX|1|L5|C|2648
7ZJX|1|L5|A|2649
7ZJX|1|L5|A|2650
*
7ZJX|1|L5|U|2662
7ZJX|1|L5|C|2663
7ZJX|1|L5|U|2664
7ZJX|1|L5|G|2665

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain Lj

60S ribosomal protein L34