J3_7ZJX_023
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 7ZJX|1|S2|A|1680
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_023 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1428
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ZJX|1|S2|C|1219
7ZJX|1|S2|C|1220
7ZJX|1|S2|A|1221
7ZJX|1|S2|G|1222
*
7ZJX|1|S2|C|1646
7ZJX|1|S2|C|1647
7ZJX|1|S2|A|1648
7ZJX|1|S2|G|1649
7ZJX|1|S2|U|1650
7ZJX|1|S2|A|1651
7ZJX|1|S2|A|1652
*
7ZJX|1|S2|U|1674
7ZJX|1|S2|G|1675
7ZJX|1|S2|A|1676
7ZJX|1|S2|U|1677
7ZJX|1|S2|U|1678
7ZJX|1|S2|A2M|1679
7ZJX|1|S2|A|1680
7ZJX|1|S2|G|1681
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S28
- Chain SQ
- Ribosomal protein S5
- Chain Sb
- 40S ribosomal protein uS9
Coloring options: