J3_7ZJX_031
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7ZJX|1|L5|U|354, 7ZJX|1|L5|A|362, 7ZJX|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_031 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0649
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ZJX|1|L5|C|351
7ZJX|1|L5|G|352
7ZJX|1|L5|A|353
7ZJX|1|L5|U|354
7ZJX|1|L5|A|355
7ZJX|1|L5|G|356
7ZJX|1|L5|U|357
7ZJX|1|L5|C|358
7ZJX|1|L5|A|359
7ZJX|1|L5|A|360
7ZJX|1|L5|C|361
7ZJX|1|L5|A|362
7ZJX|1|L5|A|363
7ZJX|1|L5|G|364
7ZJX|1|L5|U|365
7ZJX|1|L5|A|366
7ZJX|1|L5|C|367
*
7ZJX|1|L5|G|374
7ZJX|1|L5|G|375
7ZJX|1|L5|A|376
7ZJX|1|L5|A|377
7ZJX|1|L5|A|378
7ZJX|1|L5|G|379
*
7ZJX|1|L8|C|21
7ZJX|1|L8|U|22
7ZJX|1|L8|C|23
7ZJX|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4
- Chain Lb
- Ribosomal protein L26
- Chain Lm
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
Coloring options: