3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
Length
21 nucleotides
Bulged bases
7ZJX|1|L5|C|4083, 7ZJX|1|L5|U|4120
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZJX_037 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0742
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

7ZJX|1|L5|OMG|3974
7ZJX|1|L5|U|3975
7ZJX|1|L5|C|3976
*
7ZJX|1|L5|G|4077
7ZJX|1|L5|C|4078
7ZJX|1|L5|C|4079
7ZJX|1|L5|U|4080
7ZJX|1|L5|C|4081
7ZJX|1|L5|A|4082
7ZJX|1|L5|C|4083
7ZJX|1|L5|G|4084
7ZJX|1|L5|A|4085
7ZJX|1|L5|U|4086
7ZJX|1|L5|C|4087
7ZJX|1|L5|C|4088
*
7ZJX|1|L5|OMG|4116
7ZJX|1|L5|G|4117
7ZJX|1|L5|U|4118
7ZJX|1|L5|G|4119
7ZJX|1|L5|U|4120
7ZJX|1|L5|C|4121

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LT
60S ribosomal Protein eL18
Chain LW
60S ribosomal protein L21
Chain Ld
60S ribosomal protein L27a
Chain Lq
60S ribosomal protein eL42

Coloring options:


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