J3_7ZJX_037
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7ZJX|1|L5|C|4083, 7ZJX|1|L5|U|4120
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0742
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7ZJX|1|L5|OMG|3974
7ZJX|1|L5|U|3975
7ZJX|1|L5|C|3976
*
7ZJX|1|L5|G|4077
7ZJX|1|L5|C|4078
7ZJX|1|L5|C|4079
7ZJX|1|L5|U|4080
7ZJX|1|L5|C|4081
7ZJX|1|L5|A|4082
7ZJX|1|L5|C|4083
7ZJX|1|L5|G|4084
7ZJX|1|L5|A|4085
7ZJX|1|L5|U|4086
7ZJX|1|L5|C|4087
7ZJX|1|L5|C|4088
*
7ZJX|1|L5|OMG|4116
7ZJX|1|L5|G|4117
7ZJX|1|L5|U|4118
7ZJX|1|L5|G|4119
7ZJX|1|L5|U|4120
7ZJX|1|L5|C|4121
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LT
- 60S ribosomal Protein eL18
- Chain LW
- 60S ribosomal protein L21
- Chain Ld
- 60S ribosomal protein L27a
- Chain Lq
- 60S ribosomal protein eL42
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