J3_7ZJX_038

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7ZJX|1|L5|U|4621, 7ZJX|1|L5|A|4677, 7ZJX|1|L5|C|4679, 7ZJX|1|L5|A|4682, 7ZJX|1|L5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|G|4498
7ZJX|1|L5|U|4499
7ZJX|1|L5|U|4500
7ZJX|1|L5|G|4501
*
7ZJX|1|L5|C|4618
7ZJX|1|L5|C|4619
7ZJX|1|L5|U|4620
7ZJX|1|L5|U|4621
7ZJX|1|L5|C|4622
*
7ZJX|1|L5|G|4675
7ZJX|1|L5|C|4676
7ZJX|1|L5|A|4677
7ZJX|1|L5|C|4678
7ZJX|1|L5|C|4679
7ZJX|1|L5|G|4680
7ZJX|1|L5|C|4681
7ZJX|1|L5|A|4682
7ZJX|1|L5|C|4683
7ZJX|1|L5|G|4684
7ZJX|1|L5|U|4685
7ZJX|1|L5|U|4686
7ZJX|1|L5|C|4687

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain LP

60S ribosomal protein L14

Chain LR

60S ribosomal protein uL13

Chain Li

60S ribosomal protein L35a