J3_7ZJX_040

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJX_040 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0907

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7ZJX|1|S2|A|40
7ZJX|1|S2|G|41
*
7ZJX|1|S2|C|482
7ZJX|1|S2|G|483
7ZJX|1|S2|C|484
7ZJX|1|S2|A2M|485
7ZJX|1|S2|A|486
7ZJX|1|S2|A|487
7ZJX|1|S2|U|488
*
7ZJX|1|S2|A2M|513
7ZJX|1|S2|G|514
7ZJX|1|S2|U|515

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SU

40S ribosomal protein S9

Chain Si

40S ribosomal protein S23