J3_7ZJX_044
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7ZJX|1|S2|G|1257, 7ZJX|1|S2|A|1259
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_044 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1318
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ZJX|1|S2|C|1238
7ZJX|1|S2|PSU|1239
7ZJX|1|S2|U|1240
7ZJX|1|S2|A|1241
7ZJX|1|S2|A|1242
7ZJX|1|S2|U|1243
7ZJX|1|S2|U|1244
7ZJX|1|S2|PSU|1245
*
7ZJX|1|S2|G|1256
7ZJX|1|S2|G|1257
7ZJX|1|S2|G|1258
7ZJX|1|S2|A|1259
7ZJX|1|S2|A|1260
7ZJX|1|S2|A|1261
7ZJX|1|S2|C|1262
7ZJX|1|S2|C|1263
7ZJX|1|S2|U|1264
7ZJX|1|S2|C|1265
7ZJX|1|S2|A|1266
7ZJX|1|S2|C|1267
*
7ZJX|1|S2|G|1517
7ZJX|1|S2|G|1518
7ZJX|1|S2|C|1519
7ZJX|1|S2|U|1520
7ZJX|1|S2|G|1521
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S29
- Chain Sa
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S18
- Chain Sf
- 40S ribosomal protein S20
Coloring options: