J3_7ZOD_004

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7ZOD|1|b|U|686, 7ZOD|1|b|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZOD_004 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.346

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZOD|1|b|U|683
7ZOD|1|b|G|684
7ZOD|1|b|A|685
7ZOD|1|b|U|686
7ZOD|1|b|C|687
7ZOD|1|b|U|688
7ZOD|1|b|A|689
*
7ZOD|1|b|U|773
7ZOD|1|b|G|774
7ZOD|1|b|G|775
*
7ZOD|1|b|C|791
7ZOD|1|b|A|792
7ZOD|1|b|A|793
7ZOD|1|b|A|794

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2