J3_7ZOD_012
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7ZOD|1|b|A|504, 7ZOD|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZOD_012 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0874
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7ZOD|1|b|G|30
7ZOD|1|b|C|31
*
7ZOD|1|b|G|474
7ZOD|1|b|C|475
7ZOD|1|b|G|476
7ZOD|1|b|A|477
7ZOD|1|b|A|478
7ZOD|1|b|A|479
7ZOD|1|b|A|480
7ZOD|1|b|G|481
7ZOD|1|b|A|482
7ZOD|1|b|A|483
7ZOD|1|b|C|484
*
7ZOD|1|b|G|496
7ZOD|1|b|A|497
7ZOD|1|b|G|498
7ZOD|1|b|U|499
7ZOD|1|b|G|500
7ZOD|1|b|A|501
7ZOD|1|b|A|502
7ZOD|1|b|A|503
7ZOD|1|b|A|504
7ZOD|1|b|A|505
7ZOD|1|b|G|506
7ZOD|1|b|A|507
7ZOD|1|b|A|508
7ZOD|1|b|C|509
7ZOD|1|b|C|510
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L23
- Chain u
- 50S ribosomal protein L24
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