J3_7ZOD_013
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7ZOD|1|b|U|34, 7ZOD|1|b|U|448, 7ZOD|1|b|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZOD_013 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0864
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ZOD|1|b|C|32
7ZOD|1|b|C|33
7ZOD|1|b|U|34
7ZOD|1|b|G|35
*
7ZOD|1|b|C|445
7ZOD|1|b|G|446
7ZOD|1|b|A|447
7ZOD|1|b|U|448
7ZOD|1|b|A|449
7ZOD|1|b|G|450
7ZOD|1|b|U|451
7ZOD|1|b|G|452
7ZOD|1|b|A|453
7ZOD|1|b|A|454
7ZOD|1|b|C|455
7ZOD|1|b|C|456
7ZOD|1|b|A|457
7ZOD|1|b|G|458
7ZOD|1|b|U|459
7ZOD|1|b|A|460
7ZOD|1|b|C|461
*
7ZOD|1|b|G|468
7ZOD|1|b|G|469
7ZOD|1|b|A|470
7ZOD|1|b|A|471
7ZOD|1|b|A|472
7ZOD|1|b|G|473
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain t
- 50S ribosomal protein L23
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