J3_7ZPQ_020
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 7ZPQ|1|5|A|1065, 7ZPQ|1|5|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_020 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.1403
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|5|U|986
7ZPQ|1|5|U|987
*
7ZPQ|1|5|A|1062
7ZPQ|1|5|G|1063
7ZPQ|1|5|A|1064
7ZPQ|1|5|A|1065
7ZPQ|1|5|G|1066
*
7ZPQ|1|5|C|1092
7ZPQ|1|5|A|1093
7ZPQ|1|5|U|1094
7ZPQ|1|5|U|1095
7ZPQ|1|5|U|1096
7ZPQ|1|5|G|1097
7ZPQ|1|5|A|1098
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BF
- 60S ribosomal protein L7-A
- Chain BS
- 60S ribosomal protein L21-A
- Chain Ba
- 60S ribosomal protein L29
Coloring options: