J3_7ZPQ_032

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7ZPQ|1|2|U|227, 7ZPQ|1|2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZPQ|1|2|A|213
7ZPQ|1|2|G|214
7ZPQ|1|2|A|215
7ZPQ|1|2|U|216
7ZPQ|1|2|A|217
7ZPQ|1|2|A|218
7ZPQ|1|2|A|219
7ZPQ|1|2|A|220
7ZPQ|1|2|A|221
7ZPQ|1|2|A|222
7ZPQ|1|2|U|223
7ZPQ|1|2|C|224
7ZPQ|1|2|A|225
7ZPQ|1|2|A|226
7ZPQ|1|2|U|227
7ZPQ|1|2|G|228
*
7ZPQ|1|2|C|237
7ZPQ|1|2|U|238
7ZPQ|1|2|C|239
7ZPQ|1|2|U|240
7ZPQ|1|2|U|241
7ZPQ|1|2|U|242
7ZPQ|1|2|G|243
*
7ZPQ|1|2|C|250
7ZPQ|1|2|A|251
7ZPQ|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AL

40S ribosomal protein S11-A