J3_7ZRS_017
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 7ZRS|1|5|A|608
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_017 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0846
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7ZRS|1|5|U|503
7ZRS|1|5|C|504
*
7ZRS|1|5|G|589
7ZRS|1|5|A|590
7ZRS|1|5|G|591
7ZRS|1|5|G|592
7ZRS|1|5|A|593
7ZRS|1|5|C|594
7ZRS|1|5|U|595
7ZRS|1|5|G|596
7ZRS|1|5|C|597
7ZRS|1|5|G|598
*
7ZRS|1|5|C|607
7ZRS|1|5|A|608
7ZRS|1|5|A|609
7ZRS|1|5|G|610
7ZRS|1|5|G|611
7ZRS|1|5|A|612
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BE
- 60S ribosomal protein L6-B
- Chain BF
- 60S ribosomal protein L7-A
- Chain Bd
- RPL32 isoform 1
Coloring options: