J3_7ZRS_031

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7ZRS|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZRS_031 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.068

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ZRS|1|2|A|41
7ZRS|1|2|G|42
7ZRS|1|2|A|43
7ZRS|1|2|U|44
7ZRS|1|2|U|45
7ZRS|1|2|A|46
7ZRS|1|2|A|47
7ZRS|1|2|G|48
*
7ZRS|1|2|C|431
7ZRS|1|2|G|432
7ZRS|1|2|C|433
7ZRS|1|2|G|434
7ZRS|1|2|C|435
7ZRS|1|2|A|436
7ZRS|1|2|A|437
7ZRS|1|2|A|438
7ZRS|1|2|U|439
*
7ZRS|1|2|A|464
7ZRS|1|2|G|465
7ZRS|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A