J3_7ZRS_034
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 7ZRS|1|2|U|1413, 7ZRS|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_034 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1847
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7ZRS|1|2|A|1336
7ZRS|1|2|A|1337
7ZRS|1|2|C|1338
*
7ZRS|1|2|G|1386
7ZRS|1|2|G|1387
7ZRS|1|2|A|1388
7ZRS|1|2|C|1389
7ZRS|1|2|U|1390
7ZRS|1|2|A|1391
*
7ZRS|1|2|U|1407
7ZRS|1|2|G|1408
7ZRS|1|2|G|1409
7ZRS|1|2|A|1410
7ZRS|1|2|A|1411
7ZRS|1|2|G|1412
7ZRS|1|2|U|1413
7ZRS|1|2|U|1414
7ZRS|1|2|U|1415
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- Rps5p
- Chain AQ
- 40S ribosomal protein S16-A
- Chain AR
- 40S ribosomal protein S17-A
- Chain AU
- RPS20 isoform 1
- Chain Ad
- RPS29A isoform 1
- Chain Ag
- Guanine nucleotide-binding protein subunit beta-like protein
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