J3_7ZRS_041
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCC*GCCACCAU
- Length
- 27 nucleotides
- Bulged bases
- 7ZRS|1|5|C|1557, 7ZRS|1|5|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_041 not in the Motif Atlas
- Homologous match to J3_8P9A_056
- Geometric discrepancy: 0.1859
- The information below is about J3_8P9A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38098.1
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7ZRS|1|5|A|1538
7ZRS|1|5|G|1539
7ZRS|1|5|A|1540
7ZRS|1|5|U|1541
7ZRS|1|5|G|1542
7ZRS|1|5|G|1543
*
7ZRS|1|5|C|1552
7ZRS|1|5|G|1553
7ZRS|1|5|U|1554
7ZRS|1|5|U|1555
7ZRS|1|5|U|1556
7ZRS|1|5|C|1557
7ZRS|1|5|A|1558
7ZRS|1|5|A|1559
7ZRS|1|5|A|1560
7ZRS|1|5|G|1561
7ZRS|1|5|G|1562
7ZRS|1|5|C|1563
7ZRS|1|5|C|1564
*
7ZRS|1|5|G|1578
7ZRS|1|5|C|1579
7ZRS|1|5|C|1580
7ZRS|1|5|A|1581
7ZRS|1|5|C|1582
7ZRS|1|5|C|1583
7ZRS|1|5|A|1584
7ZRS|1|5|U|1585
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S ribosomal protein L2-A
- Chain BG
- 60S ribosomal protein L8-A
- Chain BM
- 60S ribosomal protein L15-A
- Chain BW
- 60S ribosomal protein L25
- Chain Bi
- 60S ribosomal protein L37-A
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