J3_7ZS5_030

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

7ZS5|1|1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZS5_030 not in the Motif Atlas

Homologous match to J3_8CRE_012

Geometric discrepancy: 0.4776

The information below is about J3_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7ZS5|1|1|G|1230
7ZS5|1|1|A|1231
7ZS5|1|1|C|1232
*
7ZS5|1|1|G|1256
7ZS5|1|1|C|1257
7ZS5|1|1|U|1258
7ZS5|1|1|A|1259
7ZS5|1|1|A|1260
7ZS5|1|1|G|1261
7ZS5|1|1|G|1262
*
7ZS5|1|1|C|1277
7ZS5|1|1|A|1278
7ZS5|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains