J3_7ZTA_037

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

7ZTA|1|23S1|A|2388, 7ZTA|1|23S1|U|2390, 7ZTA|1|23S1|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_037 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0786

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ZTA|1|23S1|G|2282
7ZTA|1|23S1|C|2283
7ZTA|1|23S1|A|2284
*
7ZTA|1|23S1|U|2384
7ZTA|1|23S1|C|2385
7ZTA|1|23S1|A|2386
7ZTA|1|23S1|U|2387
7ZTA|1|23S1|A|2388
7ZTA|1|23S1|G|2389
7ZTA|1|23S1|U|2390
7ZTA|1|23S1|G|2391
7ZTA|1|23S1|A|2392
7ZTA|1|23S1|U|2393
7ZTA|1|23S1|C|2394
7ZTA|1|23S1|C|2395
*
7ZTA|1|23S1|G|2421
7ZTA|1|23S1|C|2422
7ZTA|1|23S1|U|2423
7ZTA|1|23S1|C|2424
7ZTA|1|23S1|A|2425
7ZTA|1|23S1|A|2426
7ZTA|1|23S1|C|2427

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L271

50S ribosomal protein L27

Chain L281

50S ribosomal protein L28

Chain L331

50S ribosomal protein L33

Chain L351

50S ribosomal protein L35