J3_7ZW0_019

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

7ZW0|1|LA|A|1065, 7ZW0|1|LA|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_019 not in the Motif Atlas

Homologous match to J3_8C3A_051

Geometric discrepancy: 0.2036

The information below is about J3_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.3

Basepair signature

cWW-cSS-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|LA|U|986
7ZW0|1|LA|U|987
*
7ZW0|1|LA|A|1062
7ZW0|1|LA|G|1063
7ZW0|1|LA|A|1064
7ZW0|1|LA|A|1065
7ZW0|1|LA|G|1066
*
7ZW0|1|LA|C|1092
7ZW0|1|LA|A|1093
7ZW0|1|LA|U|1094
7ZW0|1|LA|U|1095
7ZW0|1|LA|U|1096
7ZW0|1|LA|G|1097
7ZW0|1|LA|A|1098

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LJ

60S ribosomal protein L7-A

Chain LW

60S ribosomal protein L21-A

Chain Le

60S ribosomal protein L29