J3_7ZW0_020

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3061

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7ZW0|1|LA|G|1230
7ZW0|1|LA|A|1231
7ZW0|1|LA|C|1232
*
7ZW0|1|LA|G|1256
7ZW0|1|LA|C|1257
7ZW0|1|LA|U|1258
7ZW0|1|LA|A|1259
7ZW0|1|LA|A|1260
7ZW0|1|LA|G|1261
7ZW0|1|LA|G|1262
*
7ZW0|1|LA|C|1277
7ZW0|1|LA|A|1278
7ZW0|1|LA|C|1279

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains