J3_7ZW0_021

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7ZW0|1|LA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_021 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0664

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7ZW0|1|LA|U|1479
7ZW0|1|LA|G|1480
7ZW0|1|LA|A|1481
7ZW0|1|LA|A|1482
7ZW0|1|LA|G|1483
7ZW0|1|LA|U|1484
7ZW0|1|LA|G|1485
*
7ZW0|1|LA|C|1857
7ZW0|1|LA|A|1858
7ZW0|1|LA|A|1859
*
7ZW0|1|LA|U|1871
7ZW0|1|LA|C|1872
7ZW0|1|LA|U|1873
7ZW0|1|LA|A|1874

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LU

60S ribosomal protein L19-A

Chain Lj

60S ribosomal protein L34-A