3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
7ZW0|1|2|A|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZW0_031 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.0481
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7ZW0|1|2|A|41
7ZW0|1|2|G|42
7ZW0|1|2|A|43
7ZW0|1|2|U|44
7ZW0|1|2|U|45
7ZW0|1|2|A|46
7ZW0|1|2|A|47
7ZW0|1|2|G|48
*
7ZW0|1|2|C|431
7ZW0|1|2|G|432
7ZW0|1|2|C|433
7ZW0|1|2|G|434
7ZW0|1|2|C|435
7ZW0|1|2|A|436
7ZW0|1|2|A|437
7ZW0|1|2|A|438
7ZW0|1|2|U|439
*
7ZW0|1|2|A|464
7ZW0|1|2|G|465
7ZW0|1|2|U|466

Current chains

Chain 2
18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sW
40S ribosomal protein S9-A
Chain sc
40S ribosomal protein S23-A

Coloring options:


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