J3_7ZW0_038

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

7ZW0|1|LA|A|398, 7ZW0|1|LA|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_038 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.0599

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ZW0|1|LA|A|369
7ZW0|1|LA|U|370
7ZW0|1|LA|G|371
7ZW0|1|LA|A|372
7ZW0|1|LA|A|373
7ZW0|1|LA|A|374
7ZW0|1|LA|A|375
7ZW0|1|LA|G|376
7ZW0|1|LA|A|377
7ZW0|1|LA|A|378
7ZW0|1|LA|C|379
*
7ZW0|1|LA|G|390
7ZW0|1|LA|A|391
7ZW0|1|LA|G|392
7ZW0|1|LA|U|393
7ZW0|1|LA|G|394
7ZW0|1|LA|A|395
7ZW0|1|LA|A|396
7ZW0|1|LA|A|397
7ZW0|1|LA|A|398
7ZW0|1|LA|A|399
7ZW0|1|LA|G|400
7ZW0|1|LA|U|401
7ZW0|1|LA|A|402
7ZW0|1|LA|C|403
7ZW0|1|LA|G|404
*
7ZW0|1|LD|C|19
7ZW0|1|LD|U|20

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Chain LD

5.8S ribosomal RNA (RDN58-1)

Nearby chains

Chain LG

60S ribosomal protein L4-A

Chain LS

60S ribosomal protein L17-A

Chain Lb

60S ribosomal protein L26-A

Chain Lo

60S ribosomal protein L39