J3_8A3D_008
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_008 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1378
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8A3D|1|A|U|2440
8A3D|1|A|C|2441
8A3D|1|A|G|2442
8A3D|1|A|G|2443
8A3D|1|A|U|2444
8A3D|1|A|C|2445
*
8A3D|1|A|G|2515
8A3D|1|A|G|2516
8A3D|1|A|A|2517
8A3D|1|A|G|2518
8A3D|1|A|U|2519
*
8A3D|1|A|A|2536
8A3D|1|A|A|2537
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L34
- Chain e
- 60S ribosomal protein L38
- Chain f
- 60S ribosomal protein L39
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