J3_8A3D_010

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|A|2551
8A3D|1|A|G|2552
8A3D|1|A|A|2553
8A3D|1|A|U|2554
8A3D|1|A|G|2555
*
8A3D|1|A|C|2572
8A3D|1|A|A|2573
8A3D|1|A|G|2574
8A3D|1|A|U|2575
*
8A3D|1|A|A|2757
8A3D|1|A|G|2758
8A3D|1|A|G|2759
8A3D|1|A|G|2760
8A3D|1|A|U|2761
8A3D|1|A|G|2762
8A3D|1|A|U|2763
8A3D|1|A|A|2764
8A3D|1|A|A|2765
8A3D|1|A|A|2766
8A3D|1|A|U|2767

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L27