J3_8A3D_014

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UAUC*GU(PSU)(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8A3D|1|A|A|4464, 8A3D|1|A|U|4465

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|U|4463
8A3D|1|A|A|4464
8A3D|1|A|U|4465
8A3D|1|A|C|4466
*
8A3D|1|A|G|4491
8A3D|1|A|U|4492
8A3D|1|A|PSU|4493
8A3D|1|A|OMG|4494
8A3D|1|A|G|4495
*
8A3D|1|A|C|4505
8A3D|1|A|C|4506
8A3D|1|A|A|4507
8A3D|1|A|C|4508
8A3D|1|A|U|4509
8A3D|1|A|A|4510
8A3D|1|A|A|4511
8A3D|1|A|U|4512
8A3D|1|A|A|4513

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain P

60S ribosomal protein L23