J3_8GLP_010

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UAUC*GU(PSU)(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8GLP|1|L5|A|4464, 8GLP|1|L5|U|4465

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|L5|U|4463
8GLP|1|L5|A|4464
8GLP|1|L5|U|4465
8GLP|1|L5|C|4466
*
8GLP|1|L5|G|4491
8GLP|1|L5|U|4492
8GLP|1|L5|PSU|4493
8GLP|1|L5|OMG|4494
8GLP|1|L5|G|4495
*
8GLP|1|L5|C|4505
8GLP|1|L5|C|4506
8GLP|1|L5|A|4507
8GLP|1|L5|C|4508
8GLP|1|L5|U|4509
8GLP|1|L5|A|4510
8GLP|1|L5|A|4511
8GLP|1|L5|U|4512
8GLP|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23