J3_8A3D_020
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8A3D|1|A|G|409, 8A3D|1|A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_020 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.309
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8A3D|1|A|U|380
8A3D|1|A|U|381
8A3D|1|A|G|382
8A3D|1|A|A|383
8A3D|1|A|A|384
8A3D|1|A|A|385
8A3D|1|A|A|386
8A3D|1|A|G|387
8A3D|1|A|A|388
8A3D|1|A|A|389
8A3D|1|A|C|390
*
8A3D|1|A|G|401
8A3D|1|A|A|402
8A3D|1|A|G|403
8A3D|1|A|U|404
8A3D|1|A|U|405
8A3D|1|A|C|406
8A3D|1|A|A|407
8A3D|1|A|A|408
8A3D|1|A|G|409
8A3D|1|A|A|410
8A3D|1|A|G|411
8A3D|1|A|G|412
8A3D|1|A|G|413
8A3D|1|A|C|414
8A3D|1|A|G|415
*
8A3D|1|C|C|19
8A3D|1|C|A|20
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain S
- 60S ribosomal protein L26
- Chain f
- 60S ribosomal protein L39
Coloring options: