J3_8A3D_023
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_023 not in the Motif Atlas
- Homologous match to J3_8C3A_055
- Geometric discrepancy: 0.1678
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8A3D|1|A|A|2598
8A3D|1|A|G|2599
8A3D|1|A|A|2600
8A3D|1|A|A|2601
8A3D|1|A|G|2602
*
8A3D|1|A|C|2737
8A3D|1|A|C|2738
*
8A3D|1|A|G|2742
8A3D|1|A|A|2743
8A3D|1|A|A|2744
8A3D|1|A|A|2745
8A3D|1|A|A|2746
8A3D|1|A|U|2747
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain a
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37a
Coloring options: