J3_8A3D_024
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8A3D|1|A|C|4337, 8A3D|1|A|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_024 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0669
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8A3D|1|A|OMG|4228
8A3D|1|A|U|4229
8A3D|1|A|C|4230
*
8A3D|1|A|G|4331
8A3D|1|A|C|4332
8A3D|1|A|C|4333
8A3D|1|A|U|4334
8A3D|1|A|C|4335
8A3D|1|A|A|4336
8A3D|1|A|C|4337
8A3D|1|A|G|4338
8A3D|1|A|A|4339
8A3D|1|A|U|4340
8A3D|1|A|C|4341
8A3D|1|A|C|4342
*
8A3D|1|A|OMG|4370
8A3D|1|A|G|4371
8A3D|1|A|U|4372
8A3D|1|A|G|4373
8A3D|1|A|U|4374
8A3D|1|A|C|4375
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain K
- 60S ribosomal protein L18
- Chain N
- 60S ribosomal protein L21
- Chain U
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36a
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