J3_8A57_006
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGA*UUGAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A57_006 not in the Motif Atlas
- Homologous match to J3_8VTW_003
- Geometric discrepancy: 0.3981
- The information below is about J3_8VTW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A57|1|A|G|1101
8A57|1|A|G|1102
8A57|1|A|A|1103
*
8A57|1|A|U|1127
8A57|1|A|U|1128
8A57|1|A|G|1129
8A57|1|A|A|1130
8A57|1|A|A|1131
8A57|1|A|A|1132
8A57|1|A|G|1133
*
8A57|1|A|C|1148
8A57|1|A|A|1149
8A57|1|A|C|1150
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L11
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