J3_8A57_008

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8A57|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A57_008 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.1422

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8A57|1|A|C|1349
8A57|1|A|U|1350
8A57|1|A|A|1351
8A57|1|A|A|1352
8A57|1|A|G|1353
*
8A57|1|A|C|1654
8A57|1|A|G|1655
8A57|1|A|C|1656
8A57|1|A|A|1657
8A57|1|A|A|1658
8A57|1|A|A|1659
8A57|1|A|C|1660
*
8A57|1|A|G|1669
8A57|1|A|U|1670
8A57|1|A|A|1671
8A57|1|A|G|1672

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34