J3_8A57_009

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A57_009 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.0977

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8A57|1|A|U|1388
8A57|1|A|C|1389
8A57|1|A|G|1390
8A57|1|A|G|1391
8A57|1|A|G|1392
8A57|1|A|A|1393
8A57|1|A|C|1394
*
8A57|1|A|G|1425
8A57|1|A|A|1426
8A57|1|A|C|1427
8A57|1|A|A|1428
8A57|1|A|A|1429
*
8A57|1|A|U|1446
8A57|1|A|A|1447

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23