J3_8A57_013
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8A57|1|A|C|2367, 8A57|1|A|A|2369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A57_013 not in the Motif Atlas
- Homologous match to J3_8VTW_007
- Geometric discrepancy: 0.2217
- The information below is about J3_8VTW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8A57|1|A|C|2328
8A57|1|A|U|2329
8A57|1|A|C|2330
*
8A57|1|A|G|2354
8A57|1|A|A|2355
8A57|1|A|G|2356
*
8A57|1|A|C|2365
8A57|1|A|A|2366
8A57|1|A|C|2367
8A57|1|A|A|2368
8A57|1|A|A|2369
8A57|1|A|G|2370
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L27
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