J3_8A57_014

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8A57|1|A|A|2551, 8A57|1|A|U|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A57_014 not in the Motif Atlas

Homologous match to J3_8VTW_008

Geometric discrepancy: 0.1153

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8A57|1|A|C|2550
8A57|1|A|A|2551
8A57|1|A|U|2552
8A57|1|A|C|2553
*
8A57|1|A|G|2578
8A57|1|A|U|2579
8A57|1|A|U|2580
*
8A57|1|A|A|2594
8A57|1|A|U|2595
8A57|1|A|U|2596
8A57|1|A|A|2597
8A57|1|A|A|2598
8A57|1|A|A|2599
8A57|1|A|G|2600

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L14