J3_8A57_015
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAU*AGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A57_015 not in the Motif Atlas
- Homologous match to J3_7A0S_012
- Geometric discrepancy: 0.1857
- The information below is about J3_7A0S_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20574.1
- Basepair signature
- cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8A57|1|A|C|2822
8A57|1|A|A|2823
8A57|1|A|U|2824
*
8A57|1|A|A|2835
8A57|1|A|G|2836
8A57|1|A|U|2837
8A57|1|A|A|2838
8A57|1|A|A|2839
8A57|1|A|G|2840
*
8A57|1|A|C|2918
8A57|1|A|G|2919
8A57|1|A|A|2920
8A57|1|A|G|2921
8A57|1|A|G|2922
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
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