J3_8A57_018
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAACAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 8A57|1|A|C|549, 8A57|1|A|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A57_018 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.257
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8A57|1|A|G|30
8A57|1|A|C|31
*
8A57|1|A|G|520
8A57|1|A|U|521
8A57|1|A|G|522
8A57|1|A|A|523
8A57|1|A|A|524
8A57|1|A|A|525
8A57|1|A|A|526
8A57|1|A|G|527
8A57|1|A|C|528
8A57|1|A|A|529
8A57|1|A|C|530
*
8A57|1|A|G|541
8A57|1|A|A|542
8A57|1|A|G|543
8A57|1|A|U|544
8A57|1|A|G|545
8A57|1|A|A|546
8A57|1|A|A|547
8A57|1|A|A|548
8A57|1|A|C|549
8A57|1|A|A|550
8A57|1|A|G|551
8A57|1|A|U|552
8A57|1|A|U|553
8A57|1|A|C|554
8A57|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
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