J3_8A5I_002
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGGGACUAACA*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A5I_002 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.1169
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8A5I|1|A|A|56
8A5I|1|A|C|57
8A5I|1|A|G|58
8A5I|1|A|G|59
8A5I|1|A|G|60
8A5I|1|A|A|61
8A5I|1|A|C|62
8A5I|1|A|U|63
8A5I|1|A|A|64
8A5I|1|A|A|65
8A5I|1|A|C|66
8A5I|1|A|A|67
*
8A5I|1|A|U|74
8A5I|1|A|G|75
8A5I|1|A|C|76
*
8A5I|1|A|G|109
8A5I|1|A|A|110
8A5I|1|A|U|111
8A5I|1|A|U|112
8A5I|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L29
- Chain 7
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
Coloring options: