J3_8A5I_011
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A5I_011 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.1433
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8A5I|1|A|U|2124
8A5I|1|A|G|2125
8A5I|1|A|G|2126
*
8A5I|1|A|C|2229
8A5I|1|A|U|2230
8A5I|1|A|A|2231
8A5I|1|A|A|2232
8A5I|1|A|C|2233
8A5I|1|A|C|2234
*
8A5I|1|A|G|2255
8A5I|1|A|A|2256
8A5I|1|A|G|2257
8A5I|1|A|A|2258
8A5I|1|A|C|2259
8A5I|1|A|A|2260
8A5I|1|A|G|2261
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain G
- 50S ribosomal protein L2
Coloring options: