J3_8A5I_020
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8A5I|1|A|A|2421, 8A5I|1|A|U|2423, 8A5I|1|A|A|2459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A5I_020 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1051
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8A5I|1|A|G|2315
8A5I|1|A|C|2316
8A5I|1|A|C|2317
*
8A5I|1|A|G|2417
8A5I|1|A|C|2418
8A5I|1|A|U|2419
8A5I|1|A|U|2420
8A5I|1|A|A|2421
8A5I|1|A|G|2422
8A5I|1|A|U|2423
8A5I|1|A|G|2424
8A5I|1|A|A|2425
8A5I|1|A|U|2426
8A5I|1|A|C|2427
8A5I|1|A|C|2428
*
8A5I|1|A|G|2454
8A5I|1|A|C|2455
8A5I|1|A|U|2456
8A5I|1|A|C|2457
8A5I|1|A|A|2458
8A5I|1|A|A|2459
8A5I|1|A|C|2460
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33 1
- Chain 8
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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